@inbook {fagherazzi_ecogeomorphology_2022, title = {Ecogeomorphology of Salt Marshes}, booktitle = {Treatise on Geomorphology (Second Edition)}, year = {2022}, pages = {445 {\textendash} 462}, publisher = {Academic Press}, organization = {Academic Press}, keywords = {Belowground biomass Ecogeomorphology Halophyte vegetation Nutrient enrichment Root scalping Salt marsh Sea level rise Tidal channels Tides and wind waves}, doi = {10.1016/B978-0-12-818234-5.00194-2}, url = {https://www.sciencedirect.com/science/article/pii/B9780128182345001942?via\%3Dihub}, author = {Fagherazzi, S. and FitzGerald, D.M. and Fulweiler, R.W. and Hughes, Z. and Wiberg, P.L. and McGlathery, K.J. and Morris, J.T. and Tolhurst, T. J. and Deegan, L.A. and Johnson, D.S. and Lesser, J.S. and Nelson, J.A.}, editor = {Shroder, J.F.} } @article {PIE448, title = {Feedbacks Between Nutrient Enrichment and Geomorphology Alter Bottom-Up Control on Food Webs}, journal = {Ecosystems}, year = {2018}, note = {PI Plum Data}, keywords = {estuary, food web theory, geomorphology, inorganic nutrients, landscape control, LTER-PIE, nutrient enrichment, population dynamics, saltmarsh, spatially coupled, trophic subsidy}, doi = {10.1007/s10021-018-0265-x}, author = {Nelson, J.A. and Johnson, D.S. and Deegan, L.A. and Spivak, A.C. and Sommer, N.R.} } @article {PIE407, title = {Discontinuities concentrate mobile predators: Quantifying organism-environment interactions at a seascape scale}, journal = {Ecosphere}, volume = {7}, number = {2}, year = {2016}, note = {Grad}, keywords = {conservation, discontinuities, distribution, drivers, habitat, LTER-PIE, mobile organisms, Morone saxatilis, population dynamics, seascape, striped bass}, doi = {10.1002/ecs2.1226}, author = {Kennedy, C.G. and Mather, M.E. and Smith, J.M. and Finn, J.T. and Deegan, L.A.} } @article {PIE422, title = {Microbial associations with macrobiota in coastal ecosystems: patterns and implications for nitrogen cycling}, journal = {Frontiers in Ecology and the Environment}, volume = {14}, year = {2016}, note = {PI Synthesis}, pages = {200-208}, keywords = {coastal ecosystems, inorganic nitrogen, LTER-PIE, macrobiota, microbes, population dynamics}, doi = {10.1002/fee.1262}, author = {Moulton, O.M. and Altabet, M.A. and Beman, J.M. and Deegan, L.A. and Lloret, J. and Lyons, M.K. and Nelson, J.A. and Pfister, C.A.} } @article {PIE420, title = {Nutrient enrichment induces dormancy and decreases diversity of active bacteria}, journal = {Nature Communications}, volume = {7}, year = {2016}, note = {Grad}, keywords = {bacteria, dormancy, LTER-PIE, nutrient enrichment, population dynamics}, doi = {10.1038/ncomms12881}, author = {Kearns, P. and Angell, J.H. and Howard, E. and Deegan, L.A. and Stanley, R.H. and Bowen, J.L.} } @article {PIE418, title = {Salt marsh persistence is threatened by predicted sea-level rise}, journal = {Estuarine and Coastal Shelf Science}, volume = {181}, year = {2016}, note = {PI Plum Data}, pages = {93-99}, keywords = {accretion, climate change, elevation, LTER-PIE, organic matter, primary production, wetlands}, doi = {10.1016/j.ecss.2016.08.018}, author = {Crosby, S.C. and Sax, D. and Palmer, M.E. and Booth, H.S. and Deegan, L.A. and Bertness, M.D. and Leslie, H.M.} } @article {PIE416, title = {Saltmarsh plant responses to eutrophication}, journal = {Ecological Applications}, year = {2016}, note = {PI Plum Data}, keywords = {coastal wetland, disturbance, eutrophication, global change, inorganic nutrients, LTER-PIE, nutrient pollution, plants, primary production, salt marsh, Spartina}, doi = {10.1002/eap.1402}, author = {Johnson, D.S. and Warren, R.S. and Deegan, L.A. and Mozdzer, T.J.} } @article {PIE419, title = {Spartina alterniflora biomass allocation and temperature: implications for salt marsh persistence with sea-level rise}, journal = {Estuaries and Coasts}, year = {2016}, note = {PI Plum Data}, keywords = {biomass, climate change, elevation, LTER-PIE, primary production, salt marsh, smooth cordgrass, Spartina alterniflora}, doi = {10.1007/s12237-016-0142-9}, author = {Crosby, S.C. and Angermeyer, A. and Adler, J.M. and Bertness, M.D. and Deegan, L.A. and Sibinga, N. and Leslie, H.M.} } @article {PIE383, title = {Flowering and biomass allocation in U.S. Atlantic coast Spartina alterniflora}, journal = {American Journal of Botany}, volume = {102}, number = {5}, year = {2015}, note = {Grad}, keywords = {biomass allocation, flowering, LTER-PIE, phenology, population dynamics, primary production, seed supply, Spartina alterniflora}, doi = {10.3732/ajb.1400534}, author = {Crosby, S.C. and Ivens-Duran, M. and Bertness, M.D. and Davey, E. and Deegan, L.A. and Leslie, H.M.} } @inbook {PIE300, title = {Ecogeomorphology of Salt Marshes}, booktitle = {Treatise on Geomorphology}, volume = {12}, year = {2013}, note = {PI Plum Data}, pages = {180-200}, publisher = {Elsevier}, organization = {Elsevier}, keywords = {disturbance, geomorphology, LTER-PIE, nutrients, salt marsh}, author = {Fagherazzi, S. and FitzGerald, D.M. and Fulweiler, R.W. and Hughes, Z. and Wiberg, P.L. and McGlathery, K.J. and Morris, J.T. and Tolhurst, T.J. and Deegan, L.A. and Johnson, D.S.}, editor = {Shroder, J. and Butler, D. and Hubb, C.} } @inbook {PIE301, title = {Ecogeomorphology of Tidal Flats}, booktitle = {Treatise on Geomorphology}, volume = {12}, year = {2013}, note = {PI Plum Data}, pages = {201-220}, publisher = {Elsevier}, organization = {Elsevier}, keywords = {disturbance, estuary, geomorphology, LTER-PIE, tidal flats}, author = {Fagherazzi, S. and FitzGerald, D.M. and Fulweiler, R.W. and Hughes, Z. and Wiberg, P.L. and McGlathery, K.J. and Morris, J.T. and Tolhurst, T.J. and Deegan, L.A. and Johnson, D.S.}, editor = {Shroder, J. and Butler, D. and Hubb, C.} } @article {PIE333, title = {Mummichog, Fundulus heteroclitus, responses to long-term, whole-ecosystem nutrient enrichment.}, journal = {Marine Ecological Progress Series}, volume = {492}, year = {2013}, note = {Grad}, pages = {211-222}, keywords = {abundance, eutrophication, growth rate, inorganic nutrients, LTER-PIE, mummichog, population dynamics, salt marsh}, doi = {10.3354/meps10495}, author = {Lockfield, K. and Fleeger, J.W. and Deegan, L.A.} } @article {PIE317, title = {What happens in an estuary doesn{\textquoteright}t stay there: patterns of biotic connectivity resulting from long term ecological research. }, journal = {Oceanography}, volume = {26}, number = {3}, year = {2013}, note = {PI Plum Data}, pages = {168-179}, keywords = {biotic connectivity, fish migration, LTER-PIE, population dynamics, striped bass}, doi = {10.5670/oceanog.2013.60}, author = {Mather, M.E. and Finn, J.T. and Kennedy, C.G. and Deegan, L.A. and Smith, J.M.} } @article {PIE306, title = {Coastal eutrophication as a driver of salt marsh loss}, journal = {Nature}, volume = {490}, year = {2012}, note = {PI Plum Data}, pages = {388-392}, keywords = {coastal eutrophication, disturbance, geomorphology, LTER-PIE, nutrients, organic matter, population dynamics, primary production, salt marsh}, doi = {10.1038/nature11533}, author = {Deegan, L.A. and Johnson, D.S. and Warren, R.S. and Peterson, B.J. and Fleeger, J.W. and Fagherazzi, S. and Wollheim, W.M.} } @article {PIE267, title = {Microbial community composition in salt marsh sediments resists perturbation by nutrient enrichment}, journal = {The ISME Journal}, volume = {5}, year = {2011}, note = {PI Plum Data}, pages = {1540-1548}, keywords = {denitrification, disturbance, estuaries, eutrophication, inorganic nitrogen, LTER-PIE, microbes, nirS, population dynamics, resistance, salt marsh}, doi = {10.1038/ismej.2011.22}, author = {Bowen, J.L. and Ward, B.B. and Morrison, H.G. and Hobbie, J.E. and Valiela, I. and Deegan, L.A. and Sogin, M.L.} } @article {PIE284, title = {Natural abundance stable isotopes and dual isotope tracer additions help to resolve resources supporting a saltmarsh food web.}, journal = {Journal of Experimental Marine Biology and Ecology}, volume = {410}, year = {2011}, note = {PI Plum Data}, pages = {1-11}, keywords = {infauna, inorganic nutrients, isotope addition, LTER-PIE, Manayunkia aestuarina, organic matter, population dynamics, Spartina, stable isotopes}, doi = {10.1016/j.jembe.2011.08.007}, author = {Galvan, K. and Fleeger, J.W. and Peterson, B. and Drake, D. and Deegan, L.A. and Johnson, D.S.} } @article {PIE247, title = {Diversity in destinations, routes and timing of small adult and sub-adult striped bass Morone saxatilis on their southward autumn migration}, journal = {Journal of Fish Biology}, volume = {77}, number = {10}, year = {2010}, note = {PI Plum Data}, pages = {2326-2337}, keywords = {coastal migration, contingent, LTER-PIE, Morone saxatilis, overwinter, population dynamics}, doi = {10.1111/j.1095-8649.2010.02811.x}, author = {Mather, M.E. and Finn, J.T. and Pautzke, S.M. and Fox, D. and Savoy, T. and Brundage III, H.M. and Deegan, L.A. and Muth, R.M.} } @article {PIE222, title = {Seasonal use of a New England estuary by foraging contingents of migratory striped bass}, journal = {Transactions of the American Fisheries Society}, volume = {139}, year = {2010}, note = {Grad}, pages = {257 - 269}, keywords = {acoustic telemetry, Atlantic coast, Chesapeake Bay, disturbance, habitat use, Hudson, LTER-PIE, Morone-saxatilis, movements, North Carolina, population dynamics, river, southern New-Jersey}, doi = {10.1577/T08-222.1}, author = {Pautzke, S.M. and Mather, M.E. and Finn, J.T. and Deegan, L.A. and Muth, R.M.} } @article {PIE185, title = {Effects of regular salt marsh haying on marsh plants, algae, invertebrates and birds at Plum Island Sound, Massachusetts}, journal = {Wetlands Ecology and Management}, volume = {17}, year = {2009}, note = {PI Plum Data}, pages = {469-487}, keywords = {coastal wetlands, disturbance, haying, LTER-PIE, Orchestia, organic matter, primary production, salt marsh, shorebirds, Spartina, stable isotopes}, doi = {10.1007/s11273-008-9125-3}, author = {Buchsbaum, R.N. and Deegan, L.A. and Horowitz, J. and Garritt, R.H. and Ludlam, J.P. and Shull, D. H.} } @article {PIE209, title = {Increased supply of ambient nitrogen has minimal effect on salt marsh bacterial production}, journal = {Limnology and Oceanography }, volume = {54}, number = {3}, year = {2009}, note = {PI Plum Data}, pages = {713 - 722}, keywords = {bacterial production, disturbance, inorganic nutrients, LTER-PIE, nitrogen, salt marsh}, doi = {10.4319/lo.2009.54.3.0713}, author = {Bowen, J.L. and Crump, B.C. and Deegan, L.A. and Hobbie, J.E.} } @article {PIE191, title = {Large-scale manipulations reveal that top-down and bottom-up controls interact to alter habitat utilization by saltmarsh fauna}, journal = {Marine Ecology Progress Series}, volume = {377}, year = {2009}, note = {Grad}, pages = {33-41}, keywords = {disturbance, ecosystem experiments, epifauna, inorganic nitrogen, LTER-PIE, multi-stressors, parasites, population dynamics, salt marsh}, doi = {10.3354/meps07849}, author = {Johnson, D.S. and Fleeger, J.W. and Deegan, L.A.} } @article {PIE210, title = {Salt marsh ecosystem biogeochemical responses to nutrient enrichment: A paired 15N tracer study.}, journal = {Ecology}, volume = {90}, number = {9}, year = {2009}, note = {PD Plum Data}, pages = {2535-2546}, keywords = {biogeochemistry, disturbance, eutrophication, inorganic nutrients, LTER-PIE, New England, nitrogen processing efficiency, organic matter, primary production, salt marsh, stable isotopes, USA}, doi = {10.1890/08-1051.1}, author = {Drake, D.C. and Peterson, B.J. and Galv{\'a}n, K.A. and Deegan, L.A. and Fleeger, J.W. and Hopkinson, C. and Johnson, J.M. and Koop-Jakobsen, K. and Lemay, L.E. and Miller, E.E. and Picard, C. and Warren, R.S.} } @article {PIE169, title = {Salt marsh sediment bacteria: their distribution and response to external nutrient inputs}, journal = {The ISME Journal}, volume = {3}, year = {2009}, note = {PI Plum Data}, pages = {924 - 934}, keywords = {bacteria, disturbance, inorganic nutrients, LTER-PIE, nitrogen, salt marsh}, doi = {10.1038/ismej.2009.44}, author = {Bowen, J.L. and Crump, B.C. and Deegan, L.A. and Hobbie, J.E.} } @article {PIE202, title = {Use of non-natal estuaries by migratory striped bass (Morone saxatilis) in summer}, journal = {Fishery Bulletin}, volume = {107}, year = {2009}, note = {PI Plum Data}, pages = {329 - 337}, keywords = {Canada, Chesapeake-bay, habitat, LTER-PIE, markov-chain, movement, patterns, population, population dynamics, salmon, site fidelity, state-space models}, author = {Mather, M.E. and Finn, J.T. and Ferry, K.H. and Deegan, L.A. and Nelson, G.A.} } @article {PIE173, title = {Plant nitrogen dynamics in fertilized and natural New England saltmarshes: a paired 15N tracer study}, journal = {Marine Ecology Progress Series}, volume = {354}, year = {2008}, note = {PD Plum Data}, pages = {35-46}, keywords = {eutrophication, inorganic nitrogen, LTER-PIE, marsh ecosystem, nitrogen cycling, nitrogen isotopes, organic matter, plant ecophysiology, primary production, Spartina alterniflora, Spartina patens}, doi = {10.3354/meps07170}, author = {Drake, D.C. and Peterson, B.J. and Deegan, L.A. and Harris, L.A. and Miller, E.E. and Warren, R.S.} } @article {PIE200, title = {Stable isotope monitoring of benthic-pelagic coupling with salt marsh fish}, journal = {Marine Ecology Progress Series}, volume = {369}, year = {2008}, note = {PI Plum Data}, pages = {193-204}, keywords = {benthic microalgae, fish, LTER-PIE, monitoring, organic matter, population dynamics, power analysis, salt marsh, Spartina, stable isotope analysis}, doi = {10.3354/meps07644}, author = {Fry, B. and Cieri, M. and Hughes, J. and Tobias, C. and Deegan, L.A. and Peterson, B.} } @article {PIE199, title = {Top-down and bottom-up control of infauna varies across the saltmarsh landscape}, journal = {Journal of Experimental Marine Biology and Ecology}, volume = {357}, year = {2008}, note = {PI Plum Data}, pages = {20-34}, keywords = {disturbance, impact assessment, indirect effects, infauna, inorganic nutrients, LTER-PIE, population dynamics, primary production, saltmarsh gradient}, doi = {10.1016/j.jembe.2007.12.003}, author = {Fleeger, J.W. and Johnson, D.S. and Galv{\'a}n, K.A. and Deegan, L.A.} } @article {PIE236, title = {Susceptibility of salt marshes to nutrient enrichment and predator removal}, journal = {Ecological Applications}, volume = {17}, number = {5}, year = {2007}, note = {PI Plum Data}, pages = {S-42-S63}, keywords = {bottom-up, disturbance, eutrophication, Fundulus heteroclitus, inorganic nutrients, LTER-PIE, multiple stressors, nutrient loading, organic matter, population dynamics, primary production, salt marsh, Spartina alterniflora, Spartina patens, species change, top-down control}, doi = {10.1890/06-0452.1}, author = {Deegan, L.A. and Bowen, J.L. and Drake, D.C. and Fleeger, J.W. and Friedrichs, C.T. and Galv{\'a}n, K.A. and Hobbie, J.E. and Hopkinson, C. and Johnson, D.S. and Johnson, J.M. and Lemay, L.E. and Miller, E.E. and Peterson, B.J. and Picard, C. and Sheldon, S. and Sutherland, M. and Vallino, J. and Warren, R.S.} } @article {PIE159, title = {Turnover rates of nitrogen stable isotopes in the salt marsh mummichog, Fundulus heteroclitus, following a laboratory diet switch.}, journal = {Oecologia}, volume = {147}, year = {2006}, note = {PI Plum Data}, pages = {391-395}, keywords = {15N, discrimination, liver, LTER-PIE, metabolism, population dynamics, trophic level}, doi = {10.1007/s00442-005-0277-z}, author = {Logan, J. and Hass, H. and Deegan, L.A. and Gaines, E.} } @inbook {PIE140, title = {The effect of habitat loss and degradation on fisheries.}, booktitle = {The Decline of Fisheries Resources in New England: Evaluating the Impact of Overfishing, Contamination, and Habitat Degradation}, series = {MIT Sea Grant College Program}, volume = {MITSG 05-5}, year = {2005}, note = {PI Coastal}, pages = {67-96}, publisher = {University of Massachusetts Press}, organization = {University of Massachusetts Press}, keywords = {fisheries, habitat, LTER-PIE, population dynamics}, author = {Deegan, L.A. and Buchsbaum, R.}, editor = {R. Buchsbaum and J. Pederson and W. E. Robinson} } @proceedings {PIE136, title = {The effects of long term nutrient addition on a salt marsh community.}, journal = {New England Estuarine Research Society (NEERS), March 7-9, 2004}, year = {2004}, note = {PI Plum Data}, address = {Burlington, Vermont}, keywords = {community, LTER-PIE, nitrogen, outfall, salt marsh}, author = {Sheldon, S.P. and Twichell, S. and Deegan, L.A.} } @proceedings {PIE123, title = {What makes mummichogs grow? The relationship between growth rates and gut contents of Fundulus heteroclitus held in enclosures along a salinity gradient in a New England salt marsh.}, journal = {New England Estuarine Research Society (NEERS)}, year = {2004}, note = {Intern}, address = {Burlington, Vermont}, keywords = {LTER-PIE, mummichog, salt marsh}, author = {Freeman, C.J. and Haas, H. and Warren, S. and Deegan, L.A. and Logan, J.} } @article {PIE106, title = {Ecological Variability in Space and Time: Insights Gained from the US LTER Program }, journal = {BioSciences}, volume = {53}, number = {Special LTER Issue}, year = {2003}, note = {PI Synthesis}, pages = {57-67}, keywords = {long-term regional ecology, LTER-PIE, spatial variability, temporal variability}, doi = {10.1641/0006-3568(2003)053[0057:EVISAT]2.0.CO;2}, author = {Kratz, T.K. and Deegan, L.A. and Harmon, M.E. and Lauenroth, W.K.} } @article {PIE113, title = {Processing watershed-derived nitrogen in a well-flushed New England estuary.}, journal = {Limnology and Oceanography}, volume = {48}, number = {5}, year = {2003}, note = {PD Coastal}, pages = {1766-1778}, keywords = {estuary, LTER-PIE, nitrogen, watershed}, doi = {10.4319/lo.2003.48.5.1766}, author = {Tobias, C.R. and Cieri, M. and Peterson, B.J. and Deegan, L.A. and Vallino, J. and Hughes, J.} } @inbook {PIE76, title = {Effects of trawling and dredging on seafloor habitat.}, booktitle = {Committee on Ecosystem Effects of Fishing
}, year = {2002}, note = {PI Coastal}, pages = {107 pp.}, publisher = {National Academy Press}, organization = {National Academy Press}, address = {Washington, DC}, keywords = {fisheries, habitat, LTER-PIE}, author = {Deegan, L.A.} } @article {PIE75, title = {Lessons learned: the effects of nutrient enrichment on the support of nekton by seagrass and saltmarsh ecosystems.}, journal = {Estuaries}, volume = {25}, number = {4b - Special SCOR Volume}, year = {2002}, note = {PI Synthesis}, pages = {585-600}, keywords = {LTER-PIE, nekton, nutrients, saltmarsh, seagrass}, doi = {10.1007/BF02804902}, author = {Deegan, L.A.} } @article {PIE38, title = {Nitrogen flow through the food web in the oligohaline zone of a New England estuary.}, journal = {Ecology}, volume = {81}, year = {2000}, note = {PD Plum Data}, pages = {433-452}, keywords = {15N-tracer, Actinocyclus normanii, benthivore, copepod, detritus, diatoms, disturbance, food web, inorganic nutrients, intertidal, LTER-PIE, macrofauna, nitrogen, oligohaline zone, planktivore, population dynamics, primary production}, doi = {10.2307/177438}, author = {Hughes, J. E. and Deegan, L.A. and Peterson, B.J. and Holmes, R.M. and Fry, B.} }